FastQCFastQC Report
Fri 13 May 2022
EGAF00002860111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences974526031
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT67849620.6962319921857479No Hit
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA40137510.4118669868552746No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACATTACTCGATCTCGTATG35763030.36697870413273753TruSeq Adapter, Index 27 (97% over 38bp)
AGTGATTAGCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC17180880.17629985709432527No Hit
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC14539880.1491995035276795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)