FastQCFastQC Report
Fri 13 May 2022
EGAF00002860112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences974526031
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTGATTAGCAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT56651970.5813284427288942No Hit
AGTGATTAGCATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA43080710.4420683350632837No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATCTC37385040.3836227951924252Illumina Single End PCR Primer 1 (96% over 33bp)
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC14554900.14935362973387828No Hit
AGTGATTAGCAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC14021080.14387588996070644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)