FastQCFastQC Report
Tue 8 Nov 2022
EGAF00002860115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007373913
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT46902410.4655908734059108No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCGATAGATCTCGTATG30850510.30624686228101683TruSeq Adapter, Index 1 (97% over 35bp)
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA26338960.2614616048728274No Hit
GAGTATAGGGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC13615770.13516103429213974No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)