FastQCFastQC Report
Wed 14 Dec 2022
EGAF00002860116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1007373913
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT43360170.4304277631219541No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGTCAGTACGTGTAGATCTC32318490.3208192070782758Illumina Single End PCR Primer 1 (96% over 31bp)
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA27670640.27468092674343453No Hit
GAGTATAGGGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12788740.12695127236236065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)