FastQCFastQC Report
Wed 14 Dec 2022
EGAF00002860125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1031631939
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT98829110.9579880795063287No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA62723310.6080008540720452No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGGCTATGATCTCGTATG45906820.44499223283547445TruSeq Adapter, Index 7 (97% over 35bp)
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC21863580.21193198052004086No Hit
CATAATGGCGAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12091150.11720410684182977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)