FastQCFastQC Report
Fri 9 Dec 2022
EGAF00002860138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences996838679
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTTCAAGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT73723840.7395764385262181No Hit
TCACTTCAAGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA55513120.5568917134685141No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATCTC19258930.19320006743036905Illumina Single End PCR Primer 1 (96% over 33bp)
TCACTTCAAGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC18084080.18141430886431323No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)