FastQCFastQC Report
Thu 17 Nov 2022
EGAF00002860277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1057994924
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTATAGGGTGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT56449700.5335535995444909No Hit
GAGTATAGGGTTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA35604970.3365325219651054No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC14131570.13356935538567857TruSeq Adapter, Index 7 (100% over 50bp)
GAGTATAGGGTGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC13609460.12863445458269512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)