FastQCFastQC Report
Tue 8 Nov 2022
EGAF00002860285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1058714919
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT80583060.7611403084421823No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA54300720.512892744075896No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC28311250.26741145790918996TruSeq Adapter, Index 9 (100% over 50bp)
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC21392410.2020601544012057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)