FastQCFastQC Report
Wed 9 Nov 2022
EGAF00002860286

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860286
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1058714919
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT72668680.6863857181557296No Hit
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA57081300.5391564714504604No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGT26140780.2469104716564403Illumina Single End PCR Primer 1 (100% over 50bp)
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC20020630.1891031253145116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)