FastQCFastQC Report
Tue 8 Nov 2022
EGAF00002860297

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860297
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1033326157
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGTTCTGTCGGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT50380870.4875601924785109No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCC33290610.32216943096312234TruSeq Adapter, Index 9 (100% over 50bp)
ACGTTCTGTCGTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA31169480.301642223888851No Hit
ACGTTCTGTCGGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC16871970.1632782629734592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)