FastQCFastQC Report
Fri 13 May 2022
EGAF00002860313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002860313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1064666555
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAATGGCGAGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT94016400.8830595791562176No Hit
CATAATGGCGATGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA66595210.6255029773148082No Hit
CATAATGGCGAGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC14108610.1325167014380385No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCTTATCTCGTATGCC12932330.12146835964054492TruSeq Adapter, Index 10 (100% over 50bp)
CATAATGGCGAGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC12516120.11755906054548694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)