FastQCFastQC Report
Mon 6 Mar 2023
EGAF00002861999

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002861999
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86888173
Sequences flagged as poor quality0
Sequence length125
%GC29

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2925050.3366453567852094No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1760230.20258568447514713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)