FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002869264

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869264
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13789
Sequences flagged as poor quality0
Sequence length154
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC1121881.35470302414969No Hit
TTGCGGCTGCCTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC5724.148234099644645No Hit
TTGCGGCTGCCTCCACTGCCCCGGTAGCCAGGCCCCACTTTGCGGCTCTC1250.9065196896076582No Hit
TTGCGGCTGCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG530.3843643483936471No Hit
TTGCGGCTGCCTCCACTGCCGAGGTAGCCAGGCCCCACTTTGCGGCTCTC380.2755819856407281No Hit
TTGCGGCTGCCTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG360.2610776706070056No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTAGAA330.2393211980564218No Hit
TTGCGGCTGCCTCCACTGCTCGCCCTTCAGCCTGGACCGCCCCCCTCCAC330.2393211980564218No Hit
TTGCGGCTGCCTCCACTGCCAAGGTAGCCAGGCCCCACTTTGCGGCTCTC320.23206904053956054No Hit
TTGCGGCTGCCTCCACTGCACCAAAGAAAATTATATTCCCCGTGCGGGTC300.217564725505838No Hit
TTGCGGCTGCCTCCACTGCGCACCTACGGCATGTTCTCCGTGGACCTCCG300.217564725505838No Hit
TTGCGGCTGCCTCCACTGTCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC290.21031256798897674No Hit
TTGCGGCTGCCTCCACTGCCCGGGTAGCCAGGCCCCACTTTGCGGCTCTC270.1958082529552542No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCCCTC240.17405178040467037No Hit
TTGCGGCTGCCTCCACTGCCTAGGTAGCCAGGCCCCACTTTGCGGCTCTC230.16679962288780914No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCCC220.15954746537094786No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCGGGCCCCACTTTGCGGCTCTC210.1522953078540866No Hit
TTGCTGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC190.13779099282036406No Hit
TTGCGGCTGCCTCCACGGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC190.13779099282036406No Hit
TTGCGGCTGCCTCCACTGCTCAGGTAGCCAGGCCCCACTTTGCGGCTCTC190.13779099282036406No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCGCTTTGCGGCTCTC190.13779099282036406No Hit
TTGCGGCTGCCTCCACTGCGTGCGGGTCAGGCAGCTTGTAGAACCATGTC180.1305388353035028No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTCGCGGCTCTC180.1305388353035028No Hit
TTGCGGCTGCCTCCACTGCCCAGGGAGCCAGGCCCCACTTTGCGGCTCTC180.1305388353035028No Hit
TTGCGGCTGCGTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC170.12328667778664151No Hit
TTGCGGCTGCCTCCACTGCCCAGGTCGCCAGGCCCCACTTTGCGGCTCTC160.11603452026978027No Hit
TTGCGGCTGCCTCCACTGCCCCAAGCCCCTCTCTCTGGCCCAACCTGTTC160.11603452026978027No Hit
TTGCGGCTGCTTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC150.108782362752919No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACCTTGCGGCTCTC150.108782362752919No Hit
TTGCGGCTGCCTCCATTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC140.10153020523605773No Hit
TTGCGGTTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC140.10153020523605773No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)