FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002869266

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869266
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13183
Sequences flagged as poor quality0
Sequence length154
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC1071881.30167640142608No Hit
TTGCGGCTGCCTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC5774.376848972161117No Hit
TTGCGGCTGCCTCCACTGCCCCGGTAGCCAGGCCCCACTTTGCGGCTCTC1150.8723355837062885No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTAGAA640.48547371614958656No Hit
TTGCGGCTGCCTCCACTGCCGAGGTAGCCAGGCCCCACTTTGCGGCTCTC460.34893423348251534No Hit
TTGCGGCTGCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG420.31859212622316624No Hit
TTGCGGCTGCCTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG400.3034210725934916No Hit
TTGCGGCTGCCTCCACTGCCAAGGTAGCCAGGCCCCACTTTGCGGCTCTC320.24273685807479328No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCGGGCCCCACTTTGCGGCTCTC300.2275658044451187No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCCCTC300.2275658044451187No Hit
TTGCGGCTGCCTCCACTGTCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC290.21998027763028144No Hit
TTGCGGCTGCCTCCACTGCTCCGTGCGGGTCAGGCAGCTTGTAGAACCAT240.182052643556095No Hit
TTGCGGCTGCCTCCACTGCCCGGGTAGCCAGGCCCCACTTTGCGGCTCTC230.17446711674125767No Hit
TTGCGGCTGCCTCCACTGCCCAGGTCGCCAGGCCCCACTTTGCGGCTCTC220.16688158992642038No Hit
TTGCGGCTGCCTCCACTGCTCAGGTAGCCAGGCCCCACTTTGCGGCTCTC210.15929606311158312No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCCC190.1441250094819085No Hit
TTGCGGCTGCCTCCACTGTTACGTGCGGGTCAGGCAGCTTGTAGAACCAT190.1441250094819085No Hit
TTGCGGCTGCCTCCACTGCCTATGCATTTGACCAGCCTCCACTAGCCCGT190.1441250094819085No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTCGAA180.13653948266707125No Hit
TTGCGGCTGCCTCCACTGCCTAGGTAGCCAGGCCCCACTTTGCGGCTCTC180.13653948266707125No Hit
TTGCGGCTGCTTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC170.12895395585223393No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTCGCGGCTCTC170.12895395585223393No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCGCTTTGCGGCTCTC170.12895395585223393No Hit
TTGCGGCTGCCTCCACGGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC160.12136842903739664No Hit
TTGCGGCTGCGTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC140.10619737540772207No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)