FastQCFastQC Report
Tue 7 May 2024
EGAF00002869267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17989
Total Bases2.7 Mbp
Sequences flagged as poor quality0
Sequence length154
%GC70

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG1586188.17054866863083No Hit
CGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG3431.9067207738062149No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG880.48918783701150703No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCACCTCTCTCCGCCCCCAGGCCCG790.4391572627716938No Hit
AGCTGCCTGACCCGCACGGTATTGGCAGTGGAGGCAGCCGCAAAGACCAA660.3668908777586303No Hit
AGCTGCCTGACCCGCACGCCCAGGGCACCCTCTCTCCGCCCCCAGGCCCG450.2501528711990661No Hit
AGCTGCCTGACCCGCACGCCAAGGGCCCCCTCTCTCCGCCCCCAGGCCCG380.21124020234587804No Hit
AGCTGCCTGACCCGCACGCCCAGGGACCCCTCTCTCCGCCCCCAGGCCCG350.1945633442659403No Hit
AGCTGCCTGACCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC350.1945633442659403No Hit
GCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC320.17788648618600256No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCCCTCCGCCCCCAGGCCCG310.17232753349268998No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCAAGGCCCG280.15565067541275224No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCGGGCCCG270.15009172271943966No Hit
AGCTGCCTGACCCGCACGCCCGGGGCCCCCTCTCTCCGCCCCCAGGCCCG260.14453277002612708No Hit
AGCTGCCTGACCCGCACGGGGACATCGTCACAACATTTCTGCAGTGGAGG250.1389738173328145No Hit
AGCTGCCTGACCCGCACGGGGAATATAATTTTCTTTGGTGCAGTGGAGGC240.13341486463950192No Hit
AGCTGCTTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG220.12229695925287676No Hit
AGTTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCG200.1111790538662516No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCCCCGCCCCCAGGCCCG190.10562010117293902No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCACCCCCAGGCCCG190.10562010117293902No Hit
AGCTGCCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCTG190.10562010117293902No Hit
AGCTGCTGACCCGCACGCCCAGGGCCCCCTCTCTCCGCCCCCAGGCCCGC180.10006114847962644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)