FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002869290

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869290
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19403
Sequences flagged as poor quality0
Sequence length154
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC1572681.0493222697521No Hit
TTGCGGCTGCCTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC9765.03014997680771No Hit
TTGCGGCTGCCTCCACTGCCCCGGTAGCCAGGCCCCACTTTGCGGCTCTC1630.8400762768644024No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTAGAA800.412307375148173No Hit
TTGCGGCTGCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG610.3143843735504819No Hit
TTGCTGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC550.2834613204143689No Hit
TTGCGGCTGCCTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG480.24738442508890376No Hit
TTGCGGCTGCCTCCACTGCCAAGGTAGCCAGGCCCCACTTTGCGGCTCTC470.24223058289955163No Hit
TTGCGGCTGCCTCCACTGCCGAGGTAGCCAGGCCCCACTTTGCGGCTCTC470.24223058289955163No Hit
TTGCGGCTGCCTCCACTGTCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC410.21130752976343867No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCCC340.17523063443797351No Hit
TTGCGGCTGCCTCCACTGCCCGGGTAGCCAGGCCCCACTTTGCGGCTCTC340.17523063443797351No Hit
TTGCGGCTGCCTCCACTGCCTAGGTAGCCAGGCCCCACTTTGCGGCTCTC310.15976910786991702No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCCCTC280.14430758130186053No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACCTTGCGGCTCTC280.14430758130186053No Hit
TTGCGGCTGCCTCCACTGCTCAGGTAGCCAGGCCCCACTTTGCGGCTCTC270.13915373911250836No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTCGCGGCTCTC260.13399989692315623No Hit
GTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC250.12884605473380406No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGTGGCTCTC240.12369221254445188No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTCGAA230.11853837035509973No Hit
TTGCGGCTGCCTCCACTGCCCAGGTCGCCAGGCCCCACTTTGCGGCTCTC220.11338452816574757No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCGGGCCCCACTTTGCGGCTCTC200.10307684378704325No Hit
TTGCGGCTGCTTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC200.10307684378704325No Hit
TTGCGGCTGTCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC200.10307684378704325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)