FastQCFastQC Report
Tue 7 May 2024
EGAF00002869296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9247
Total Bases1.4 Mbp
Sequences flagged as poor quality0
Sequence length154
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC652670.57424029414945No Hit
TTGCGGCTGCCTCCACTGCTCCGTGCGGGTCAGGCAGCTTGTAGAACCAT5285.709959987022819No Hit
TTGCGGCTGCCTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC3984.304098626581594No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTAGAA2943.1794095382286147No Hit
TTGCGGCTGCCTCCACTGCAGAAATGTTGTGACGATGTCCCCGTGCGGGT890.9624743159943766No Hit
TTGCGGCTGCCTCCACTGCCCCGGTAGCCAGGCCCCACTTTGCGGCTCTC880.9516599978371364No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTCGAA700.757002271006813No Hit
TTGCGGCTGCCTCCACTGCGTGCGGGTCAGGCAGCTTGTAGAACCATGTC660.7137449983778523No Hit
TTGCGGCTGCCTCCACTGCCAATCCCGTGCGGGTCAGGCAGCTTGTAGAA560.6056018168054504No Hit
TTGCGGCTGCCTCCACTGCCAATCCCGTGCGGGTCAGGCAGCTTGTCGAA340.3676868173461663No Hit
TTGCGGCTGCCTCCACTGCAGAACTGTTGTGACGATGTCCCCGTGCGGGT310.33524386287444574No Hit
TTGCGGCTGCCTCCACTGCTGGGCGAGGGTCTGCGTGCGGGTCAGGCAGC270.291986590245485No Hit
TTGCGGCTGCCTCCACTGTTACGTGCGGGTCAGGCAGCTTGTAGAACCAT250.27035795393100465No Hit
TTGCGGCTGCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG240.2595436357737645No Hit
TTGCGGCTGCCTCCACTGCCGAGGTAGCCAGGCCCCACTTTGCGGCTCTC220.2379149994592841No Hit
TTGCGGCTGCCTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG200.2162863631448037No Hit
TTGCGGCTGCCTCCACTGCACCCGGCAGTGCGTGCGGGTCAGGCAGCTTG180.19465772683032334No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCGGGCCCCACTTTGCGGCTCTC170.18384340867308316No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCCCTC170.18384340867308316No Hit
TTGCGGCTGCCTCCACTGCCAAGGTAGCCAGGCCCCACTTTGCGGCTCTC150.1622147723586028No Hit
TTGCGGCTGCCTCCACTGCAATCTGTGCCTCTGTAGTCGTGCGGGTCAGG140.1514004542013626No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGTGGCTCTC130.14058613604412243No Hit
TTGCGGCTGCCTCCACTGTCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC130.14058613604412243No Hit
TTGCGGCTGCCTCCACTGCCCAGGTCGCCAGGCCCCACTTTGCGGCTCTC110.11895749972964205No Hit
TTGCGGCTGCCTCCACTGCTACGTGCGGGTCAGGCAGCTTGTAGAACCAT110.11895749972964205No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCGCTTTGCGGCTCTC110.11895749972964205No Hit
TTGCGGCTGCCTCCACTGCCCGGGTAGCCAGGCCCCACTTTGCGGCTCTC100.10814318157240185No Hit
TTGCGGCTGCCTCCACTGCCCAGGGAGCCAGGCCCCACTTTGCGGCTCTC100.10814318157240185No Hit
TTGCGGCTGCCTCCACTGCCTAGGTAGCCAGGCCCCACTTTGCGGCTCTC100.10814318157240185No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)