FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002869298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002869298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16194
Sequences flagged as poor quality0
Sequence length154
%GC69

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC1295479.99258984809188No Hit
TTGCGGCTGCCTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC7074.365814499197233No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTAGAA1751.080647153266642No Hit
TTGCGGCTGCCTCCACTGCCCCGGTAGCCAGGCCCCACTTTGCGGCTCTC1631.0065456341855008No Hit
TTGCGGCTGCCTCCACTGCTCCAGACAAGACAGACCCCAGCGTGCGGGTC630.3890329751759911No Hit
TTGCGGCTGCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG610.37668272199580094No Hit
TTGCGGCTGCCTCCACTGTTACGTGCGGGTCAGGCAGCTTGTAGAACCAT520.321106582684945No Hit
TTGCGGCTGCCTCCACTGCCAATACCGTGCGGGTCAGGCAGCTTGTCGAA460.2840558231443745No Hit
TTGCGGCTGCCTCCACTGCCGAGGTAGCCAGGCCCCACTTTGCGGCTCTC460.2840558231443745No Hit
TTGCGGCTGCCTCCACTGCCGAGGGGAGCAAGAGTGGCCGCAGCTTTGAA410.253180190193899No Hit
TTGCGGCTGCCTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG400.24700506360380386No Hit
TTGCGGCTGCCTCCACTGCCAATCCCGTGCGGGTCAGGCAGCTTGTAGAA390.24082993701370878No Hit
TTGCGGCTGCCTCCACTGCCAAGGTAGCCAGGCCCCACTTTGCGGCTCTC360.2223045572434235No Hit
TTGCGGCTGCCTCCACTGTCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC340.20995430406323332No Hit
TTGCGGCTGCCTCCACTGCACCAAAGAAAATTATATTCCCCGTGCGGGTC320.19760405088304311No Hit
TTGCGGCTGCCTCCACTGCCTAGGTAGCCAGGCCCCACTTTGCGGCTCTC310.19142892429294803No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCCC260.1605532913424725No Hit
TTGCGGCTGCCTCCACTGCAGAAATGTTGTGACGATGTCCCCGTGCGGGT250.15437816475237742No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTCGCGGCTCTC240.14820303816228234No Hit
TTGCGGCTGCCTCCACTGCCCAGGCCGCCAGGCCCCACTTTGCGGCTCTC220.13585278498209213No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCCCTC210.12967765839199705No Hit
GTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC210.12967765839199705No Hit
TTGCGGCTGCCTCCACTGCCCGGGTAGCCAGGCCCCACTTTGCGGCTCTC200.12350253180190193No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCGCTTTGCGGCTCTC190.11732740521180685No Hit
TTGCGGCTGCCTCCACTGCCCAGGGAGCCAGGCCCCACTTTGCGGCTCTC180.11115227862171174No Hit
TTGCGGCTGCGTCCACTGCCCAGGCAGCCAGGCCCCACTTTGCGGCTCTC170.10497715203161666No Hit
TGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTCG170.10497715203161666No Hit
TTGCGGCTGCCTCCACTGCCCAGGTAGCCAGGCCCCACCTTGCGGCTCTC170.10497715203161666No Hit
TTGCGGCTGCCTTCACTGCCCAGGTAGCCAGGCCCCACTTTGCGGCTCTC170.10497715203161666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)