FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002871777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002871777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11479008
Sequences flagged as poor quality0
Sequence length35-51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN906720.7898940396243299No Hit
GGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC249330.21720518009918627No Hit
GGTTAGGCTGGTGTTAGGGTTCTTTGTTTTTGGGGTTTGGCAG210660.18351760012711898No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC195090.16995371028576683No Hit
GTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC187340.16320225580468278No Hit
GGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTG153820.134001126229723No Hit
TTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTGTGC134540.11720524979161961No Hit
GGGGTTTGGTGGAAATTTTTTGTTATGATGTCTGTGTGGAAAGCGGCTG125150.10902510042679646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)