FastQCFastQC Report
Tue 19 Apr 2022
EGAF00002873580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences675385099
Sequences flagged as poor quality0
Sequence length66
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29612620.4384553352427457No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAACGC7161450.032.1873912
CAACGCA7539350.030.78692413
ATCAACG7593500.030.59727311
GTGGTAT8032200.029.7446946
AAGCAGT7951100.029.6619681
AGTGGTA8162450.029.4242465
GAGTACA8394050.028.79285620
AGCAGTG8404650.028.0262052
GTACATG8596850.027.87537622
AACGCAG8424950.027.79216614
CGCAGAG8838050.027.64157116
TATCAAC8530200.027.30729110
ACGCAGA8696700.027.21718215
TACATGG8777950.027.17191523
GTATCAA8790850.026.424419
GGTATCA8993200.026.3948158
AGTACAT9152150.026.3012821
CAGTGGT9400900.025.6151314
TGGTATC9551450.025.1239627
ACATGGG9480600.024.85316724
Produced by FastQC (version 0.11.5)