FastQCFastQC Report
Tue 14 Feb 2023
EGAF00002873671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75868316
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTAT12361971.6293982325902685TruSeq Adapter, Index 16 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTA2444780.32223991896696375TruSeq Adapter, Index 16 (97% over 40bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT858520.11315922710080978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)