FastQCFastQC Report
Wed 22 Feb 2023
EGAF00002873720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68564733
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATTGA1011450.14751752916473837No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC972260.1418017627225355Illumina Single End PCR Primer 1 (100% over 50bp)
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC852710.12436568519854077No Hit
GTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCC730980.10661165996227245No Hit
CTTTGTGTTTGAGGGGGTGATCTAAAACACTCTTTACGCCGGCTTCTATT720740.10511818080003316No Hit
AAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCT705180.10284879254178676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)