FastQCFastQC Report
Thu 23 Feb 2023
EGAF00002873751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70799781
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC1238370.17491155798914124No Hit
GTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCC965960.13643545027349732No Hit
GGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAT930340.1314043612649028No Hit
GAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTG821240.11599470907967921No Hit
GGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTATTGTTGATATGGA784330.1107814161176572No Hit
GGTTGGGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAA775920.10959355933600981No Hit
GGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACCAGTCAA760700.107443835172315No Hit
GCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAAT722790.102089298835543No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)