FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002873899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78965994
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGC6630000.8396019177571551TruSeq Adapter, Index 8 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATG1938530.24548921653541142TruSeq Adapter, Index 8 (100% over 49bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT809590.10252387882307921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)