FastQCFastQC Report
Fri 24 Feb 2023
EGAF00002873903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64203806
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATGC1158600.18045659162324426TruSeq Adapter, Index 12 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCTTGTAATCTCGTATG740490.11533428407655459TruSeq Adapter, Index 12 (100% over 49bp)
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC736500.11471282559167909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)