FastQCFastQC Report
Thu 23 Feb 2023
EGAF00002873905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences73484632
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTAT13082521.7803069354691738TruSeq Adapter, Index 20 (97% over 44bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGGCCTTATCTCGTA1773140.2412939891976325TruSeq Adapter, Index 20 (97% over 44bp)
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC941280.12809208869685842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)