FastQCFastQC Report
Thu 9 Feb 2023
EGAF00002873915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77858748
Sequences flagged as poor quality0
Sequence length100
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC2429170.3119970539469759TruSeq Adapter, Index 11 (100% over 50bp)
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC808970.10390226156731931No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)