FastQCFastQC Report
Tue 24 Jan 2023
EGAF00002873925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116361972
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC3369960.28961007982917303TruSeq Adapter, Index 11 (100% over 50bp)
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC1618670.13910644278183942No Hit
GTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCC1339590.11512266223882833No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG1276790.1097257100455465TruSeq Adapter, Index 11 (100% over 49bp)
GGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTCGTAAACCCTAT1188290.10212013251202033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)