FastQCFastQC Report
Sun 5 Mar 2023
EGAF00002873944

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002873944
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57934500
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTTCACC731730.1263029800895839No Hit
AAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCT665850.11493151748957875No Hit
GTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCC647280.11172617352354815No Hit
GAGGTCGTAAACCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTG585840.10112109364886208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)