FastQCFastQC Report
Wed 8 May 2024
EGAF00002874690

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874690
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201266
Total Bases14.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18710.9296155336718572No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA7540.37462860095594885No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4030.20023252809714506No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA3150.15650929615533674No Hit
GTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATTTCATATT2770.1376288096350104No Hit
TTATTTTAGTGTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAA2760.13713195472658074No Hit
CACCAATACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGA2160.10732066022080232No Hit
TACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTT2150.10682380531237268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)