FastQCFastQC Report
Wed 8 May 2024
EGAF00002874694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences263840
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA25750.975970285021225No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA6340.24029714978775016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5140.194815039417829No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)