FastQCFastQC Report
Wed 8 May 2024
EGAF00002874714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences750214
Total Bases53.2 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA58190.7756453491936968No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA56540.7536516247364086No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21020.2801867200558774No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC14370.19154534572801893No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG13120.17488343326037636No Hit
GAGGAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAA11980.15968776908988636No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)