FastQCFastQC Report
Wed 8 May 2024
EGAF00002874716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences230431
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7210.3128919286033563No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6320.2742686530892111No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA3810.16534233675156554No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)