FastQCFastQC Report
Wed 8 May 2024
EGAF00002874735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences306891
Total Bases21.7 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40041.3046977591392384No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6670.21734101032614186No Hit
GGTTATATCAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCG6080.19811594344571853Illumina Single End PCR Primer 1 (100% over 41bp)
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA5320.1733514505150037No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)