FastQCFastQC Report
Tue 7 May 2024
EGAF00002874783

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874783
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23396
Total Bases1.6 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1630.696700290647974No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1620.6924260557360232No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1200.5129081894340912No Hit
GTACTAGAGTTGATAAATGTGTACAGGGTCCTTTTGCAATAAAACTGGTT290.12395281244657207No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC290.12395281244657207No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG260.1111301077107198No Hit
TGTTAAACCCACAGAATAAGATTAGGATCTGTTATGTAAAAGGCACAGTC250.10685587279876901No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)