FastQCFastQC Report
Wed 8 May 2024
EGAF00002874792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1238162
Total Bases87.9 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG130361.0528509193465798No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA27660.22339564612708193No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21650.17485595584422717No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)