FastQCFastQC Report
Tue 7 May 2024
EGAF00002874801

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874801
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75582
Total Bases5.3 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6980.9235003043052579No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGA6390.8454393903310311No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTT4580.6059643830541663No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCA3390.44851948876716674No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2070.27387473207906643No Hit
GTCCCATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTT2020.26725940038633533No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGA1590.21036754782884814No Hit
GAATATTCCTATGGGACCTGCACTGTCATGGGTATTAACCACAGATTCTG1580.20904448149030191No Hit
GAACAGAGAGAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACT1560.20639834881320948No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA1510.1997830171204784No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGC1310.17332169034955414No Hit
GTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAAT1220.16141409330263817No Hit
GATGAGAACAGAGAGAAATATATTCATAATTTACTTTATGACCTAGAAGG1160.1534756952713609No Hit
TCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTG1120.14818342991717606No Hit
GAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACTGTCGTGTGT1110.14686036357862983No Hit
GCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGA1060.14024503188589876No Hit
CTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGC1060.14024503188589876No Hit
GTCCTGTTATTCAACAGAATATTCCTATGGGACCTGCACTGTCATGGGTA1010.13362970019316767No Hit
CCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAG1000.13230663385462146No Hit
TCTCCGGGGTGTGTGAAATCAGTGGCCGCCTCTACAGACTCTGCTGTCGC980.12966050117752903No Hit
GCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTACTTTATG980.12966050117752903No Hit
GAGAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACTGTCGTGT960.12701436850043663No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAG940.12436823582334419No Hit
ATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTTTCAGC940.12436823582334419No Hit
CCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTACTTTATGA940.12436823582334419No Hit
CAACAAGGGCTTTCACTTGCCATTGCAGAAGGTCCTGTTATTCAACAGAA860.11378370511497446No Hit
CCTATGGGACCTGCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTC860.11378370511497446No Hit
TCTTAGAGCTTTGGGCTCAACAAGGGCTTTCACTTGCCATTGCAGAAGGT820.1084914397607896No Hit
CTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAG770.10187610806805852No Hit
GACCTGCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGA760.10055304172951231No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)