FastQCFastQC Report
Wed 8 May 2024
EGAF00002874840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521447
Total Bases37 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57171.0963722104068103No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA20270.38872598749249687No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC14570.27941478232687117No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8480.16262438943938695No Hit
GTAATAGGGCTTCTGCCTAAGCCTCTCCCTCCAGCCAATAGGCAGCTTTC5420.10394153192941948No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)