FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002874901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414450
Sequences flagged as poor quality0
Sequence length71
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12360.2982265653275425No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCAGGCCGGTTGCGCCTGCCCTCGGGCCCTCACGGAGGCG10470.25262395946435034No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGC9620.23211485100735912No Hit
CCTGTAATCCCAGCCACTCAGGAGGGCTGAGGCGGGAGAATCGCTTGAACTCGTAAGGCAGAGGTTGCAGT9530.22994329834720711No Hit
TTGTGGCTCAGGCCGGTTGCGCCTGCCCTCGGGCCCTCACGGAGGCGGGGGTTCCAGGGCACGAGTTCGAG9270.22366992399565688No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATT7320.17661961635903003No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGA7270.17541319821450116No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCAGGCCGGTTGCGCCTGCCCTCGGGCCCTCACGGAGGC5550.1339124140427072No Hit
ATCTATCACCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGC5370.1295693087224032No Hit
GGCCGGTTGCGCCTGCCCTCGGGCCCTCACGGAGGCGGGGGTTCCAGGGCACGAGTTCGAGGCCAGCCTGG4750.11460972373024489No Hit
GCCCTCGGGCCCTCACGGAGGCGGGGGTTCCAGGGCACGAGTTCGAGGCCAGCCTGGTCCACATGGGTCGG4250.10254554228495597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)