FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002874913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76709
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA13411.748165143594624No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3790.49407501075493093No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG1410.1838115475367949No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATT1020.13297005566491546No Hit
GTTTATGTATGTACAAAACAGTAAGACATTGGTTAAATAAATTATAAAGCATTCATTTGATAGAATACAGC930.12123740369448174No Hit
ACCTGGTCCTGCGCCTGAGGGGTGGCTGTTAATTCTTCAGTCATGGCATTCGCAGTGCCCAGTGATGGCAT850.11080837972076288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)