FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002874927

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002874927
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55848
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14302.560521415270019No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3710.6643031084371867No Hit
AAGTAGTTGGGTATAAGATCTGAACTTTTCATCTGCAGAGGCAAGAAAAATATTTGACATTGTGACTTGAC770.137874230053001No Hit
ATACTTGTTTATCTGGACTGCCAGTAAAACAAATGTGTATTCAACAAAAGAAAAAAAATAAAACAGTAACA700.12534020913909183No Hit
CAGTAGAACATCAATAAATTACATCAGAAATTCAACACTTTATTATAAAACGGGCTTCGTGTTAGATAATT670.11996848589027359No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA630.11280618822518264No Hit
GTAAAGGAAGAGTCAACTGGAAAATTCAAGGAGTTAATAAAATTTGTTTACTTGGTCCCAGCTTTTGAGAG630.11280618822518264No Hit
CTTCATTATTGATGACAAAGGAATCCTAAGACAAATTACTCTGAATGATCTTCCTGTGGGTAGATCAGTGG610.10922503939263717No Hit
ATCCACATCAGGCCTGGCCAGCTGGATGTTCTTAAAGAGTTCCACAAGCAGATTACTGCACGGGCAACAAA600.10743446497636443No Hit
GAAATGAACCTACAAATAGTTGACAGAGCCATTCAGGTAGTTCGAAGTGCTTTAGCTAACCAGATAGATTG580.10385331614381893No Hit
ATATAATATTGTAACTTGCATGTATCCATACCTGGATTTGGGATGAAATACTTAATGATCTTTCCATTGGA580.10385331614381893No Hit
GTCTCAGATGACGCCTGTTATAGAGAAACATGTCCATATATACGGGATCCTTTAAATGGCCAAGCAGTCCC570.10206274172754619No Hit
GTCATGGGAGAGCCACACTTGATGGTGGAATATAAACTTGGTTTACTGTAATAGTGTGCTGTTCATGGAAA560.10027216731127346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)