FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27666
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5041.8217306441119063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2050.7409817104026604No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGA440.15903997686691246No Hit
GTGATATTGTAGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAA410.14819634208053206No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG340.12289452757897781No Hit
CATTTTAATTTTTACAATTGATGTAACATCTTAATTAACCTTTTAATTTTCACAATTGATGACAGTGTGAG300.10843634786380395No Hit
GAATTGGAATTGCACCATTTCGTAGATAAAGGAAACTAAGTATATTGCTGCACTTTTAAGTTTTCAAAACA300.10843634786380395No Hit
GGATTGAGAATATTAGTTGAGAAGGTGCAGCATGAAGAACTGGCTTCTTCAGTGTGTGACACTGTGCTATG280.10120725800621701No Hit
TCATTGTACAGTCAGTACTATAAAATTTCTCTTTTGAGTTTTATACCTTTGTAGCATTTTAGATGACATTG280.10120725800621701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)