FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28851
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10323.5769990641572216No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1330.46098922047762647No Hit
GACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAA410.1421094589442307No Hit
AGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAG340.11784686839277668No Hit
TCCCTGAATAGACCAATAACAGGCTCTGAAATTGAGGCAATAATTAATAGCCTACCAGCCAAAAAAAGTCC300.10398253093480295No Hit
TTGCAGTACTTACCCTTGGCTAAGAACTGCACTGCTTTGTTTAAAGGACTGCAGACCAAGGAGCGAGCTTT290.10051644657030953No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)