FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7765
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG2152.7688345138441726No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1682.163554410817772No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG811.0431423052157116No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAA580.7469414037347071No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA480.618158403090792No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT470.6052801030264005No Hit
CTCCCTGCCACATTGAGATGATCCTTACGGAAAAGGAACAGATTGTTCCTAAACCAGAAGAGGAGGTTGCC170.2189311010946555No Hit
GCCCCATCCTCCAGCAGGGAAAATGCAGCAGGGATGCCCTGGAGGTGGCTGAGCCCCTGTCTAGAGAGGGA130.1674179008370895No Hit
GTTTTTAGACCTGTGTTACTAAAAAAAAGATGAATGTCCTGAAAAGGGTGTTGGGAGGGTGGTTCAACAAA110.1416613007083065No Hit
ACAAAGCACCTAAGATGCGCCGCCGGACCTACAGAGCTCATGGTCGGATTAACCCATACATGAGCTCTCCC110.1416613007083065No Hit
GCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTT100.128783000643915No Hit
ACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAA100.128783000643915No Hit
GTGGAAGAAGTGAGAGATGCTGGCCTGCGCCTGCACCTGCGCCTGGCTCTGTCACCGCCATGCAACTCCAT100.128783000643915No Hit
ATTCAATCCTATCCCCATCAAGCTACCATTGACTTTCTCCACAGAATTGGAAAAAACTACTTTAAATTTCA90.1159047005795235No Hit
ATCTTCCTGTGGGTAGATCAGTGGATGAGACACTACGTTTGGTTCAAGCATTCCAGTACACTGACAAACAC90.1159047005795235No Hit
ACAATCAACCAACAAGTCATTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAA90.1159047005795235No Hit
GATGAAAAATTATAACCAAGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTA90.1159047005795235No Hit
GCCCAACACTGCTCTCTTTGTGTTTGGTTTTTTTGTTTTTGTTTTTATTTTGTTTTTTTCCAATTCTTTAC90.1159047005795235No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG90.1159047005795235No Hit
CCAGTTTTTTCTAACATGAATTTTCCTGGTTGACATTGATTTCAAAGGGTTTTATGCATTAAAGTGAAAGA90.1159047005795235No Hit
GAATTCAGGGCCCAAGCTCCCCACTGATGGAAAGATACAAAGAAACTACTTGCCAGAAGCCAGGACCAATT80.10302640051513201No Hit
CATTTTTCCATTTCCAAAAAATAAAATTTATTATGCTTTATAACCTCTTCTGTATTTTCTAATTTTTTCAT80.10302640051513201No Hit
GTTTACCTTTGCTTTAGGTCATAAGTTCCTTATTTGATTGCTGTATATGGATACATGGCTGTTCGTGACAT80.10302640051513201No Hit
CTACCACACATTCGAAGAACCCGTATACATAAAATCTAGACAAAAAAGGAAGGAATCGAACCCCCCAAAGC80.10302640051513201No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACC80.10302640051513201No Hit
GCCCATGTGTCGCTGGGGAGGAAGTGACCCTTTGTGTAACTGTAACCGAAAGTTTTTTCAAAAATCCTAGA80.10302640051513201No Hit
GCTCCAGGGCTACCTGCGATCTGTGTTTGCTCTGACGAATGGAATTTATCCTCACAAATTGGTGTTCTAAA80.10302640051513201No Hit
GAAACTCAATAAAGATTTTACCTGTGATGTGGAAAGAAATGAGTCATTGATCAAATCAGGAAAGAAACCTT80.10302640051513201No Hit
GTTTACGACCTCGATGTTGGATCAGGACATCCCGATGGTGCAGCCGCTATTAAAGGTTCGTTTGTTCAACG80.10302640051513201No Hit
CCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC80.10302640051513201No Hit
TGGTACATGTCTGTAATCCCAGCTACTCAGAAGACTGAGGCACAAGAATCGCTTGAACCCGGGAGGCGGAG80.10302640051513201No Hit
GATGTAATTCTGTGTATCTTACCGTGACTCCGAAAACTGTAGTATTGGTGTCATGGGAATGTACGTTATTT80.10302640051513201No Hit
AGTTGAGGTGCCAAGCGAAAAATAGCTTCTATGTAAGAATAACATAACCAGCAAAACTGTGCTACAAAAAT80.10302640051513201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)