FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002875229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484191
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40930.8453275670138437No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9650.19930151531110657No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTA5470.11297194702090704No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG4960.10243891356923197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)