FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39153
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG1310.3345848338569203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG880.22475927770541212No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA870.22220519500421423No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA750.19155620258983985No Hit
GTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATTTCATATTATTTTAGTGTGTAAAATTAAT550.14047454856588257No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG490.12515005235869536No Hit
AGTCAAGACAGTGGTTCAGTTGGAAGGTGACAATAAACTGGTGACAGCTTTCAAAAACATCAAGTCTGTGA400.1021633080479146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)