FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75582
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6480.8573469873779471No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTA6140.8123627318673758No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTTTCAGCAAAAAAAAAAAAAAAA2030.2685824667248816No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1840.24344420629250352No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTC1380.18258315471937764No Hit
GAATATTCCTATGGGACCTGCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAAC1350.178613955703739No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCATTAAAAAAAAAAAAAAAAAAA1310.17332169034955414No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGC1270.16802942499536927No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGACCCGTATTTACCCTATAG1160.1534756952713609No Hit
GTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTACTTTATG1110.14686036357862983No Hit
TCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCT1070.14156809822444497No Hit
GCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATA1040.13759889920880633No Hit
CTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTG960.12701436850043663No Hit
GTCCTGTTATTCAACAGAATATTCCTATGGGACCTGCACTGTCATGGGTATTAACCACAGATTCTGCTGCC910.12039903680770554No Hit
GAACAGAGAGAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACTGTCGTGTGTCCTATACATTGC910.12039903680770554No Hit
CCTCTACAGACTCTGCTGTCGCTGAGCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTC910.12039903680770554No Hit
CCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACTGTCGTGT870.11510677145352068No Hit
GCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTACTTTATGACCTAGAAGGAAACTGTCGTG850.11246063877642824No Hit
CCTATGGGACCTGCACTGTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGA830.10981450609933582No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGA800.10584530708369717No Hit
CAACAAGGGCTTTCACTTGCCATTGCAGAAGGTCCTGTTATTCAACAGAATATTCCTATGGGACCTGCACT800.10584530708369717No Hit
TCTTAGAGCTTTGGGCTCAACAAGGGCTTTCACTTGCCATTGCAGAAGGTCCTGTTATTCAACAGAATATT770.10187610806805852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)