FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84339
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA65157.724777386499722No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10171.2058478284067868No Hit
ATAATACGCCATGCTGGATGGCTCACACCTGTAATCCCAGTGCACGGGGGGGCTGAGGCAGGAGATTCTTG1040.1233118723247845No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG890.10552650612409442No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA880.10434081504404843No Hit
GGTTCATTGTCTGAGATCAGTTGATAACTTATTTGTGGTGGTTCAGGAGTTTCAAGATTACCAGTTCAAAC860.1019694328839564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)