FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002875664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002875664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24978
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8113.2468572343662427No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1080.43238049483545515No Hit
GACACAAACCAGCTTGCTGACAAAGGGAAGCTTTCTCCTCATGCTTTCAAAACCGAATCTGGGGAGGAAAC510.20417967811674273No Hit
CATATATGCGAATCTATAAGAAAGGTGATATTGTAGACATCAAGGGAATGGGTACTGTTCAAAAAGGAATG490.19617263191608614No Hit
GGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAAGTGGGGTGGGACGACAGTGAA420.16814797021378813No Hit
AGATAGAAGTTTGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAGAAAAGAATAGAGAAGATAG390.15613740091280326No Hit
CTCTATTAATTGGGTAGGATTTCACCCATTCCTAGCTAAGTTCTTAAAATTAAACCCTTTGGTTCGTGTTT390.15613740091280326No Hit
GTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGA380.15213387781247498No Hit
GTTGTGGCTCTATAAGCAGGTTCTAGAGCCTTCTTTCCGCCAGGCCTTTCCCAATACCAACCGCTGGTTCC350.1401233085114901No Hit
AAATTACTTATCATCCACATTGTTTTAAAAAGAAACAAGATGCTGGATGTCTGCCAATTTTTGCCTTCATT340.13611978541116182No Hit
CGGCACGACTGGGACTACTGTGAGCACCGCGACTATGTGATGCGCATGAAGGAGTTTGAGCGGGAGCGGAG310.12410921611017696No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACGCAGGGAGAATTGCGTCATT300.12010569300984868No Hit
GCACTGAAGAGTTGATTAGCTAAAAATGTTAGCCTTGTAATTCGAATATCTGGTTTTAAATGATAGAGGTT300.12010569300984868No Hit
TTCCAGAAAAGTTCAGTTCGAATCAAGAACCCTACAAGAGTAGAAGAAATTATCTGTGGTCTTATCAAAGG290.11610216990952038No Hit
GGCAAGGGCAAACACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGGCAAATGGGA280.1120986468091921No Hit
GTGTATAATGACTAATTATGCTTTCATTGTCTATTCTGTGTGGTTATGTTACTTGCTGAAATTAATACATA270.10809512370886379No Hit
GTTAAAAACAATTAAAATACATGATGGCATTGATGTAAATATGAGGAAGAGATGATCAGAACTAAAGTGTT270.10809512370886379No Hit
TGCTGCAAGATTACTAAATAGTGAGGAAATGGAAGAATTACCTATTTCTTTCTTTCTTTTGTTTTTTTTTT260.1040916006085355No Hit
GAATTATATCAATAGGTGCAGGAAAAAGTACTTAACAAAATATAATACCCATTTATGATAAAAACTCTCAG260.1040916006085355No Hit
TCAAGGTCGTGCGTCTGAAGCCTACAAGAAAGTTTGCCTATCTGGGGCGCCTGGCTCACGAGGTTGGCTGG260.1040916006085355No Hit
AGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAG250.10008807750820722No Hit
GTAATGTGCATTAAGTTTGAGACTTTTTTTTTAACACCTGGGAGTTTGAGAAGGCAAATAGGGAAAAGAAA250.10008807750820722No Hit
ACTATCATCTTTGTAGATATCTTAAAGGTGTAAAGTTTGCAAATTTGAAGAAATATATATTAACACTGTGG250.10008807750820722No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)