FastQCFastQC Report
Wed 8 May 2024
EGAF00002876013

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002876013
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1932101
Total Bases137.1 Mbp
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74970.3880231934044856No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA72160.3734794402570052No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATA58200.30122648867735174No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAG44570.23068152234277609No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCA25850.1337921775310918No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCAC24460.1265979366503097No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGC20640.10682671351031856No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)